Publications

1. Primer Designing based on Nef Protein of HIV-1Selected for poster presentation in International Conference on Applied Biotechnology-2009, 28-30 March 2009 Yeshwant Advanced Research Center of Bioinformatics and Biotechnology, Parbhani, Maharashtra.

2. Ashish Gupta, Santosh Kumar Pal, Ashish Trivedi, Samantha Vaishnavi, Smita Rastogi, Prachi Srivastava, Ashish Runthala; Insilico Microarray Analysis for Helicobacter pylori Using Gene Expression Data. International Journal of Applied Biology and Pharmaceutical Technology (2010). 1(3): 1175-1180. http://ijabpt.com/pdf/83063-Ashish%20Gupta[1].pdf

3. Designing of Vector and Vector map based on genome of Emiliania huxleyi phage. Selected for oral presentation in African Virtual Conference on Bioinformatics 2009, February 19-20, 2009.

4. Ashish Gupta, Anshika Malaviya , M. Sharada Potukuchi, Jitendra Narayan; Three Dimensional Structure Modelling and Analysis of Ribulose 1, 5 Bisphosphate Carboxylase of Hypericum perforatum. Conference Proceeding BIOCOMP 2010, Las Vegas, Nevada, USA. (2010). 807-810.  http://www.informatik.uni-trier.de/~ley/db/conf/biocomp/biocomp2010.html

5. Monkey Pox Thymidine Kinase: Hypothesized Structure and its Docking Studies. Selected for oral presentation in Coalescence of Computer Science & Biotechnology, CCSB-2009, Feb 16-17 ’09 Andhra University, Visakhapatnam, India.

6. Rachna Chaturvedi, Himanshu Yadav and Ankur Mohan; Effect of Thunder (Weedicide) on the Growth and Nodulation of Vigna mungo L: Insilico and In Vitro Approach pp. 87-92 http://www.ripublication.com/Volume/jcibv4n1.htm

7. Rahul VV, Neetu Jabalia, Ashish Gupta, Jitendra Narayan; Biojotter: A Biological Notepad. Journal of Computational Intelligence in Bioinformatics (2011). 4(1): 135-138. http://www.ripublication.com/Volume/jcibv4n1.htm

8. Tracing Ancestry of Anti-Microbial Lipid A Acylation Proteins and identifying their Protein Fingerprints. Selected for oral presentation in National Seminar on Antimicrobial Resistance: From Emerging Threat To Reality, March 23-25, 2009, Department of Microbiology & Microbial Technology, Allahabad Agricultural Institute, Deemed University, UP, India

9. Harshada H. Pilley and Nitin M. Atre; Homology Modeling based Protein Structure Prediction of Iron- regulated Peptidyl-Prolyl cis-trans Isomerase A from Mycobacterium tuberculosis Strains H37Rv
pp. 79-86 http://www.ripublication.com/Volume/jcibv4n1.htm

10. Ashish Gupta, Santosh Kumar Pal, Jitendra Narayan, M. Sharada Potukuchi; InSilico structure prediction of p27SJ, a novel protein in St John’s Wort, that suppresses expression of HIV-1 genome. Biofrontiers (2009). 1(1): 32-35. http://biofrontiers.org/?p=144

11. A GSK3 Protein as a Potential Drug Target for Alzheimer's disease. Selected for oral presentation in “National Conference on Genes and Dreams”, October 11-12, 2008, Yeshwant Advanced Research Center of Bioinformatics and Biotechnology, Parbhani, Maharashtra.

12. Ankit Shukla, Menorca Chaturvedi, Ramyash Pal, Ankur Mohan and Santosh Kumar; BioZephyr: A Computational Biology Workbench 
pp. 41-46  http://www.ripublication.com/Volume/jcibv4n1.htm

 13. Barneet Singh, Ashish Gupta, Sharada M. Potukuchi; Comparative Modeling and Analysis of 3D Structure of Hsp 70, in Cancer Irroratus. Biological Forum. (2009). 1(2): 1-4. http://researchtrend.net/bf12/1_Sharda.pdf   

14. Homology Modeling: Software versus Servers. Selected for poster presentation in “National Conference on Genes and Dreams”, October 11-12, 2008, Yeshwant Advanced Research Center of Bioinformatics and Biotechnology, Parbhani, Maharashtra.

15. Amit Kumar Singh and Utkarsh Raj; The Cathelicidins: Structural Analysis of Human Peptide Antibiotic 
pp. 23-31 http://www.ripublication.com/Volume/jcibv4n1.htm

16. Ashish Kumar, Prakhar Bisht, Ashish Gupta, Sharada M Potukuchi, A K Srivastava; Comparative Modeling Study of RNA Polymerase C of Hypericum perforatum. Journal of Computational Intelligence in Bioinformatics. (2011). 4(1): 47-54. http://www.ripublication.com/Volume/jcibv4n1.htm 

Predicated Protein Structure

1. Priyanka Sasi Kumar, Kushagra Srivastava, Ankur Mohan, Amit Kr. Singh, Ashish Gupta , J.Narayan, Santosh Kr. Pal.29/05/2009. Predicted and submitted structure of Rhodopsin Kinase (http://mi.caspur.it/PMDB/)PMDB ID-PM0075809

2. Amit Kumar Singh, Varsha Gupta, Santosh Kumar Pal, Jitendra Naryan. 10/07/2008. Predicted and submitted structure of Killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1, (KIR3DL1), Homo sapiens, (http://mi.caspur.it/PMDB/) PMDB ID- PM0075392

3. Pooja Sharma, Mala Sharma, Meenakshi Pal, Pooja Srivastava, Zeba Zaheer, Anupama Verma, Saad Abdullah, Bashah Javed, Santosh Kumar Pal, Jitendra Naryan Varsha Gupta, Amit Kumar Singh. Predicted and submitted structure of Seryl t-RNA Synthetase, Homo sapiens, (http://mi.caspur.it/PMDB/) PMDB ID- PM0075426

4. Dr. Prachi Srivastava, Santosh kumar, Jitendra Naryan, Varsha gupta, Amit Kumar Singh. Predicted and submitted structure of Envelope Glycoprotein of Simian-HIV (http://mi.caspur.it/PMDB/) PMDB ID- PM0075425